Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGRKWANIVAKKTAKDGANSKVYAKFGVEIYVAAKQGEPDPESNSALKFVLDRAKQAQVPKHVIDKAIDKAKGNTDETFVEGRYEGFGPNGSMIIVDTLTSNVNRTAANVRTAYGKNGGNMGASGSVSYLFDKKGVIVFAGDDADTVFEQLLEADVDVDDVEAEEGTITVYTAPTDLHKGIQALRD----NGVEEFQVTELEMIPQSEVVL------EGDDLETFEKLIDALESDDDVQKVYHNVADF |
2LQJ Chain:A ((151-227)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------VRVICRPKAETYVRAHIVQRTSSND-ITLRGIRTGPAGDDNITLTAHLLMVGHTPAKLERLVAELSLQPGVYAVHWYA--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23068 for 415 contacts (-55.6/contact) +
2D Compatibility (PS) -7634 + (NN) -4099 + (LL) 9388
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -27113.0 ( -65.33 by residue)
QMean score : 0.535
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