Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGNWWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDG------------SYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTATPGVVSYIYPN
2IM9 Chain:A ((263-308))
-----------------------------------------------------------------------------------------------------QIPNGAVIEIIRPNWDLRQQIGTELDISHLGFAIWIN---NELFFRQAS-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2IM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16311 for 153 contacts (-106.6/contact) +
2D Compatibility (PS) -4212 + (NN) -3815 + (LL) 7244
1D Compatibility (HY) -2000 + (ID) 200
Total energy: -19294.0 ( -126.10 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_2IM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IM9-query.scw
PDB file :
Tito_Scwrl_2IM9.pdb
: