Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSFEELLATMTLITAAEIEDKID--SNQDFVLFIGRISCPFCHLFVPKIVEVADED-EFELFHLDSED-FDHWTANKEFRNKYDIPTVPGLMVVKNG-TI-KVKCDSKMTKEEIREFIG
2PU9 Chain:C ((4-106))
-------VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK------TLAKELGIRVVPTFKILKENSVVGEVT-GA-K-YDKLLEAIQ
General information:
TITO was launched using:
RESULT:
Template:
2PU9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84013 for 677 contacts (-124.1/contact) +
2D Compatibility (PS) -10311 + (NN) -1225 + (LL) 1340
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -101459.0 ( -149.87 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_2PU9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PU9-query.scw
PDB file :
Tito_Scwrl_2PU9.pdb
: