Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKILAACGAGVNSSHQIKDAIETQLGDRGYNVHCDAVMVKDITEEMVNKYDIFTPIAKTDLGFNVPIPVVEAGPILYRIPVMSEPVFTALEQVIKEHNLS
1YOB Chain:A ((1-56))
-AKIGLFFGSNTGKTRKVAKSIKKRFDDETM-S--DALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGLG
General information:
TITO was launched using:
RESULT:
Template:
1YOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25989 for 349 contacts (-74.5/contact) +
2D Compatibility (PS) -5722 + (NN) 2308 + (LL) 228
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -32125.0 ( -92.05 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_1YOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YOB-query.scw
PDB file :
Tito_Scwrl_1YOB.pdb
: