Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---M-SFFRNQLA-NVVEWEEFRD--DMIFYKWNNREIKKGS-RLIIRPGQDAVFLNN------GRVEGVFQDDGDYDIESEIIPFLSTLKGFKFGFNSGMRAEVLFVNTKEFTVRWGTKQAINIPAAGMPGGMPIRANGTFNFKVQDYISLIDKIAGVKDQYFVEDIKTRIISILDQLL-----MKWITREGKDMFNLQANAFDIAKGIQEDLDMQLISDGMTV----------TGFQIMSFNYPQEVQDMITKNASYGMVGDV-NRYQQISMTDGMASGKMSGSGAASDMAGMMMGMNMANQMMNQMNQNQQAQSSGPQSTGSGSKPNFCPNCGTKTGEANFCPNCGQKLV---------------------------
2ODL Chain:A ((70-441))GLQGMDVVHGTATMQVDGNKTIIRNSVDAIINWKQFNIDQNEMVQFLQENNNSAVFNRVTSNQISQLKGILDSNG--------QVFLINPNGITIGKDAIINTNGFTASTLDISNENIKARNFTFEQTKDKALAEIVNHGLITVGKDGSVNLIGGKVKNEGVISVNGGSISLLAGQKITISDIINPTITYSIAAPENEAVNLGDIFAKGGNINVRAATIRNQGKLSADSVSKDKSGNIVLSAKEGEAEIGGVISAQNQQAKGGKLMITGDKVTLKTGAVIDLSGKEGGETYLGGDERGEGKNGIQLAKKTSLEKGSTINVSGKEKGGRAIVWGDIALIDGNINAQGSGDIAKTGGFVETSGHDLFIKDNAIVDAKEWLLD


General information:
TITO was launched using:
RESULT:

Template: 2ODL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2053 -63200 -30.78 -200.63
target 2D structure prediction score : 0.35
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -30.78
2D Compatibility (Sec. Struct. Predict.) : 0.35
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.155

(partial model without unconserved sides chains):
PDB file : Tito_2ODL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2ODL-query.scw
PDB file : Tito_Scwrl_2ODL.pdb: