Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNGQTPARHYYKKLVPSLILILNCIQFLSHPTKADPILLAFVFAVYLAFIWIIPYVASTAVSLSIFIGLWLLTDFFWAVSGQEQGAAYFLIVFLMIYAAFRLPSRLSLIFTACLIGGNILLLSSQGGSLNTIISNISIMLGLYVLFSSMRFRREARREAERNHAELAKMHVQLEHAHKELQKAHAELQEASVLSLRYAVLEERTRIARDIHDSIGHELTSVIVQLQSLPYILKSSKEDSEKVIQNVLSVARECLQEVRSVVHQMGRSE-------SMVGL-TALRGLIHQV---EERS-GLHVSLDTAGLSEESWPPNVSETIYRILQEALTNIIRHADA---------SHAAAVISNDKSHLYVTITDDGQFTGS--------------LTYGFGLTGMKERAEKAGGSLTFSAVQPSGLKIELSLPLMTTNKEQKDEQR
4E01 Chain:A ((148-405))-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHIE-DEKLVRYFLDKTLTSRLGIRMLATHHLALHEDKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRING-HVAARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTA-GFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG---------


General information:
TITO was launched using:
RESULT:

Template: 4E01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 653 -19273 -29.51 -98.84
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.54

3D Compatibility (PKB) : -29.51
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.400

(partial model without unconserved sides chains):
PDB file : Tito_4E01.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4E01-query.scw
PDB file : Tito_Scwrl_4E01.pdb: