Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPVNVISVAVVASDPLTRDGALARLSSHRELDVR-AWQ--------A-GCETSVLLVLATTITAP-LLCQIEDVQKDGPSHAPKLVVVADEFSAEQVFRMIKLGLTGLLYRSQSTFDCIVETIRLSAEGRLRLPERVQ--RYLVGRIKSTPTAEPDTPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAHALRAGLI
3C3W Chain:A ((2-208))
------VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVR-LPDGNGIELCRDLLSRM--PDLRCLILTSYTSDEAMLDAILAGASGYVVK-DIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRG-----AAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELK--
General information:
TITO was launched using:
RESULT:
Template:
3C3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137053 for 1452 contacts (-94.4/contact) +
2D Compatibility (PS) -20953 + (NN) -6662 + (LL) 752
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -174366.0 ( -120.09 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_3C3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3C3W-query.scw
PDB file :
Tito_Scwrl_3C3W.pdb
: