Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTGTATTRRRLLAVLIALALPGAAVALLAEPSATGASDPCAASEVARTVGSVAKSMGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASDLHALSQPLTDLSTRCSLPISGLQAIGLMQAVQGARR
1YGT Chain:A ((8-111))
-SQFIVDDVSKTIKEAIETTIGGN--------AYQHDKVNNWTGQVVENCLTVLTKEQ------KPYKYIVTAMIMQKNGAGLHTASSCYWNNDT--------------DGSCTVRWENKTMYCIVSVFGLAV---
General information:
TITO was launched using:
RESULT:
Template:
1YGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47756 for 682 contacts (-70.0/contact) +
2D Compatibility (PS) -11201 + (NN) -4373 + (LL) 2640
1D Compatibility (HY) -2000 + (ID) 600
Total energy: -63290.0 ( -92.80 by residue)
QMean score : 0.379
(partial model without unconserved sides chains):
PDB file :
Tito_1YGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YGT-query.scw
PDB file :
Tito_Scwrl_1YGT.pdb
: