Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVCAAFSGGAGASDAGALLEAARRGDTAQVASLLERKVEVDAPSADGSTPLLLATANDHLAVARQLIEAGADVNRQNSRLDSPYLLAGAEGRLEILRLTLLHGA----------DLKSTNRYGGTALIPACERGHVEVVKTLL-QAGVDPNHVNKLGWTGLLEAILLSDGGPRHQEIVRLLIDAGADVNLADADGVSPLAHARQRGQ-GGIERLLLAAGAQ
4OAU Chain:C ((71-242))
----------------------------------------------NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL------
General information:
TITO was launched using:
RESULT:
Template:
4OAU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55343 for 1283 contacts (-43.1/contact) +
2D Compatibility (PS) -17875 + (NN) -14947 + (LL) 3880
1D Compatibility (HY) -10000 + (ID) 2800
Total energy: -97085.0 ( -75.67 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_4OAU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OAU-query.scw
PDB file :
Tito_Scwrl_4OAU.pdb
: