Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLRSVIAADHPALFALWSRTPGIR----LRAEDAY---PFFLAYLQRNPGLSLLVETEGEVIACLMAGHD-------GRRGYLQHLVVDPGYRGLGLARRMLDEVLARLAREGIGKSHVFVLDAAEEAQAFWRAQSDWERRKDIQVFSTREGHA
1Z4E Chain:A ((5-152))
VTIREATEGDLEQMVHMLADDVLGRKRERYEKPLPVSYVRAFKEIKKDKNNELIVACNGEEIVGMLQVTFTPYLTYQGSWRATIEGVRTHSAARGQGIGSQLVCWAIERAKERGCHLIQLTTDKQRPDALRFYEQL-GFKASHEGLKMH------
General information:
TITO was launched using:
RESULT:
Template:
1Z4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92337 for 892 contacts (-103.5/contact) +
2D Compatibility (PS) -14459 + (NN) -7304 + (LL) 244
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -117356.0 ( -131.57 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1Z4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z4E-query.scw
PDB file :
Tito_Scwrl_1Z4E.pdb
: