Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGV-PRFLKGQGQGWLTAEYGMLPRSTGERNQREASRGKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVAAVSVGIYQGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQG--TAEGAPFRPAELNAMLELAQQGMQELFELQRAALAE
3M85 Chain:E ((17-237))
--RLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPGPDR-----RSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDA-----------GVPMKGMITSVAVGKADGQLVLDPMKEEDNFGEADMPFAFLIRNGKIESIALLQMDGRMTR-DEVKQAIELAKKGALQIYEMQREAI--
General information:
TITO was launched using:
RESULT:
Template:
3M85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97066 for 1841 contacts (-52.7/contact) +
2D Compatibility (PS) -23975 + (NN) -11438 + (LL) 1032
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -148097.0 ( -80.44 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_3M85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M85-query.scw
PDB file :
Tito_Scwrl_3M85.pdb
: