Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
1MKV Chain:A ((1-121))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK---
General information:
TITO was launched using:
RESULT:
Template:
1MKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53716 for 896 contacts (-60.0/contact) +
2D Compatibility (PS) -12835 + (NN) -7001 + (LL) 2536
1D Compatibility (HY) -16000 + (ID) 4750
Total energy: -91766.0 ( -102.42 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1MKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MKV-query.scw
PDB file :
Tito_Scwrl_1MKV.pdb
: