Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1A4R Chain:A ((1-136))
MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
1A4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63795 for 968 contacts (-65.9/contact) +
2D Compatibility (PS) -14342 + (NN) -6176 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 6750
Total energy: -111863.0 ( -115.56 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1A4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A4R-query.scw
PDB file :
Tito_Scwrl_1A4R.pdb
: