Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
3GFT Chain:F ((19-185))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDE------DSYRKQVVIDGETCLLDILDTA---------DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK----------------------
General information:
TITO was launched using:
RESULT:
Template:
3GFT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103948 for 1244 contacts (-83.6/contact) +
2D Compatibility (PS) -16732 + (NN) -5664 + (LL) 2780
1D Compatibility (HY) -21200 + (ID) 7350
Total energy: -152114.0 ( -122.28 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3GFT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFT-query.scw
PDB file :
Tito_Scwrl_3GFT.pdb
: