Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALEKSLVRLLLLVLILLVLGWVQPSLGKESRAKKFQRQHMDSDSSPSSSSTYCNQMMRRRNMTQGRCKPVNTFVHEPLVDVQNVCFQEKVTCKNGQGNCYKSNSSMHITDCRLTNGSRYPNCAYRTSPKERHIIVACEGSPYVPVHFDASVEDST
3DJP Chain:A ((1-124))
----------------------------KESAAAKFERQHMDSGNSPSSSSNYCNLMMCCRKMTQGKCKPVNTFVHESLADVKAVCSQKKVTCKNGQTNCYQSKSTMRITDCRETGSSKYPNCAYKTTQVEKHIIVACGGKPSVPVHFDASV----
General information:
TITO was launched using:
RESULT:
Template:
3DJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37487 for 804 contacts (-46.6/contact) +
2D Compatibility (PS) -13816 + (NN) -10138 + (LL) 3316
1D Compatibility (HY) -11600 + (ID) 4500
Total energy: -74225.0 ( -92.32 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_3DJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DJP-query.scw
PDB file :
Tito_Scwrl_3DJP.pdb
: