Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSRRVDVMDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFRGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDLLNP
3LTP Chain:B ((9-225))
--------MDVMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGMDIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIGQDSFLISPGVGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIESIKDL---
General information:
TITO was launched using:
RESULT:
Template:
3LTP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181768 for 1902 contacts (-95.6/contact) +
2D Compatibility (PS) -23491 + (NN) -6023 + (LL) 744
1D Compatibility (HY) -31200 + (ID) 10800
Total energy: -252538.0 ( -132.77 by residue)
QMean score : 0.869
(partial model without unconserved sides chains):
PDB file :
Tito_3LTP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LTP-query.scw
PDB file :
Tito_Scwrl_3LTP.pdb
: