Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQ-QLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
4KN5 Chain:A ((24-252))
RYGVINAMAEEKAALVDAMIDEKKTTIAGKLFHHGKIGHVDVVVVESGIGKVASALTTTLLITNFGVDAVINSGSAGALGTDLRIGDIVIADYLAYADADARAFGYAYGQVPQQPARFKADTDLSNDLSESYEKVTDARLVRGLVVTSDSFIASNEQKQTILTHFPEAQSAEMEGASIAQVANYFDVPFAVVRAISDNANGEAGMTFDDFIVEAGQQSAQVLINFFEAQ
General information:
TITO was launched using:
RESULT:
Template:
4KN5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133937 for 1949 contacts (-68.7/contact) +
2D Compatibility (PS) -24656 + (NN) -10428 + (LL) 0
1D Compatibility (HY) -14000 + (ID) 4950
Total energy: -187971.0 ( -96.44 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4KN5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KN5-query.scw
PDB file :
Tito_Scwrl_4KN5.pdb
: