Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSL-PADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAM---TARRRGVVINPVLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1Y6H Chain:A ((1-175))
-SVRKILRMGDPILRKISEPVTED---EIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLT--K---DTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNETLDSSHNV-----------------
General information:
TITO was launched using:
RESULT:
Template:
1Y6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71036 for 1317 contacts (-53.9/contact) +
2D Compatibility (PS) -18379 + (NN) -4263 + (LL) 12
1D Compatibility (HY) -12400 + (ID) 2800
Total energy: -108866.0 ( -82.66 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6H-query.scw
PDB file :
Tito_Scwrl_1Y6H.pdb
: