Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE
4DR8 Chain:A ((18-171))
---------------PLDLHYLGDRVLRQPAKRVSR-IDDELRQTIRQMLQTMYSA------------DGIGLAAPQVGINKQLIVIDLELEDEQ-AP-------PLVLINPKIERTAGDLE--QCQEGCLSIP-GVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLEL----------
General information:
TITO was launched using:
RESULT:
Template:
4DR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52776 for 1154 contacts (-45.7/contact) +
2D Compatibility (PS) -16241 + (NN) -4510 + (LL) 4132
1D Compatibility (HY) -8400 + (ID) 2450
Total energy: -80245.0 ( -69.54 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_4DR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR8-query.scw
PDB file :
Tito_Scwrl_4DR8.pdb
: