Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL
2NO1 Chain:B ((40-280))
-------------------RIKKISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNVQS-------------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTL-TNFDYLQEVPILTLDVNEDF---YESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
2NO1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108368 for 1750 contacts (-61.9/contact) +
2D Compatibility (PS) -23823 + (NN) -7608 + (LL) 1392
1D Compatibility (HY) -32800 + (ID) 10500
Total energy: -181707.0 ( -103.83 by residue)
QMean score : 0.650
(partial model without unconserved sides chains):
PDB file :
Tito_2NO1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NO1-query.scw
PDB file :
Tito_Scwrl_2NO1.pdb
: