Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGPRRLLLVAACFSLCGPLLSARTRARRPESKATNATLDPRSFLLRNPNDKYEPFWEDEEKNESGLTEYRLVSINKSSPLQKQLPAFISEDASGYLTSSWLTLFVPSVYTGVFVVSLPLNIMAIVVFILKMKVKKPAVVYMLHLATADVLFVSVLPFKISYYFSGSDWQFGSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVPGLNITTCHDVLNETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSAVANRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHT-----STTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVYSILCCKESSDPSSYNSSGQLMASKMDTCSSNLNNSIYKKLLT |
2LNL Chain:A ((39-323)) | -----------------------------------------------------------------------------------------------------KYVVIIAYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAASK--VNGWIFGTFLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLT-QKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYH-PNNSSPVCYEVLGNDTA-KWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKAH---MGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAMHG----------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LNL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239604 for 2067 contacts (-115.9/contact) +
2D Compatibility (PS) -27202 + (NN) 4158 + (LL) 7648
1D Compatibility (HY) -27200 + (ID) 3850
Total energy: -286050.0 ( -138.39 by residue)
QMean score : 0.168
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