Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVGSAIAPCISYVTGR--G-G-------------------LTQGCCNGVKGLNNAARTTADRQAACRCLKTLAGTIK--S-L-------NLGAAAGIPGKCGVNVGFPISLSTDCSKVS
1PSY Chain:A ((25-119))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42759 for 485 contacts (-88.2/contact) +
2D Compatibility (PS) -6084 + (NN) -346 + (LL) 1448
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -52991.0 ( -109.26 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: