Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIC----DMDINDMQKCRPAIT----GNNPPPPV-NDCCVVVRKANFECLCR---------FKFYLPILRID----PSKVVALVAKCGVTTVPRSCQV--------------
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34987 for 400 contacts (-87.5/contact) +
2D Compatibility (PS) -7537 + (NN) -1649 + (LL) 180
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -47643.0 ( -119.11 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: