Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IPVC----NIDTNDLAKCRPAVT----GNNPPPPG----PDCCAVARVANLQCLC-----------------PYKPYLPTV-GIDPSRVRPL------LANCGVNS----PSCF----
1BEA Chain:? ((5-120))
--SCVPGWAIPHNPLPSCRWYVTSRTCGIGPRLPWPELKRRCCRELADIPAYCRCTALSILMDGAIPPGPDAQLEGRLEDLPGCPREVQRGFAATLVTEAECNLATISGVAECPWILG
General information:
TITO was launched using:
RESULT:
Template:
1BEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10450 for 373 contacts (-28.0/contact) +
2D Compatibility (PS) -7599 + (NN) -2801 + (LL) 64
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -25036.0 ( -67.12 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1BEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BEA-query.scw
PDB file :
Tito_Scwrl_1BEA.pdb
: