Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGQVTSSLAPCINYLRGT--GAG------------------AIPPGCCSGIKSLNSAAQTTPDRQAACKCIKSAAAGIP--G-I-------NFGLASGLPGKCGVNIPYKISPSTDCSSVK
1PSY Chain:A ((25-121))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32747 for 511 contacts (-64.1/contact) +
2D Compatibility (PS) -6257 + (NN) 319 + (LL) 1088
1D Compatibility (HY) -3200 + (ID) 850
Total energy: -41647.0 ( -81.50 by residue)
QMean score : 0.234
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: