Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGQVTNSLAPCINYLRGS--GAG------------------AVPPGCCSGIKSLNSAAQTTPDRQAACRCIKSAAAGIT--G-I-------NFGLASGLPGKCGVNIPYKISPSTDCNRFV
1PSY Chain:A ((25-121))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34524 for 511 contacts (-67.6/contact) +
2D Compatibility (PS) -6336 + (NN) -187 + (LL) 1232
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -43915.0 ( -85.94 by residue)
QMean score : 0.206
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: