Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ALSCGQVDSKLAPCVAYVTGR--AS-------------------AISKECCSGVQGLNGLARSSPDRQTACRCLKSLATSIK---AI-------NMGKVSGVPGKCGVSVPFPISMSTDCNKVH
1PSY Chain:A ((25-122))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQT--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38267 for 498 contacts (-76.8/contact) +
2D Compatibility (PS) -6418 + (NN) -815 + (LL) 772
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -48528.0 ( -97.45 by residue)
QMean score : 0.179
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: