Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------------AISCGAVTSDLSPCLTYLTGGPGPSPQC---CGGVKKLLAAAN-----------TTPDRQAACNCLKSAAGSI-----TKLNTNNAAALPGKCGVNIPYKISTTTNCNTVKF-------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAA-AGSVVDALRAVRNA-----APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATYAE-TGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28500 for 416 contacts (-68.5/contact) +
2D Compatibility (PS) -9185 + (NN) -4484 + (LL) -204
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -46073.0 ( -110.75 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: