Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AISCGQVVSSLTPCISYVTK---GGA-------------IPAPCCNGIESLNNQATSTPDRQTACNCIKSAAASIK--G-I-------NFSLAGSLPGKCGVNLPYKISPSIDCSTVQ
1SM7 Chain:A ((13-101))
--------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45730 for 421 contacts (-108.6/contact) +
2D Compatibility (PS) -6238 + (NN) 439 + (LL) 1432
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -55347.0 ( -131.47 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: