Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSC--GVV--AGDLAQCLTYLKK---GGRVPP----ACCKGVVALKSAAKTTQDRQDACNCMKQTASKV-------GGVN----AGFAAALPRLCKVNIAYKISTSTNCTSIK---------
1HSS Chain:A ((5-124))
-MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI--------SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIV--VDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46291 for 503 contacts (-92.0/contact) +
2D Compatibility (PS) -8457 + (NN) -4814 + (LL) 944
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -65018.0 ( -129.26 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: