Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QQPSCAAQLT----QLAPCARVGVAPAPGQPLPAP-PAECCSALGAVSHDCACG-----------------------TLDIINSLPAKCGLPRVT---------CH--------
1HSS Chain:A ((5-124))
---MCYPGQAFQVPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32642 for 385 contacts (-84.8/contact) +
2D Compatibility (PS) -6704 + (NN) -1160 + (LL) 100
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -45756.0 ( -118.85 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: