Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-QAPAPEPTAEAPGPDCFTNLLS---LSDCLTYVEAGSNLTKPEK-------------------PCCPELAGLVESTPQCLCYLL---------DKNATSSYGFNIDMNRALNLPTVCKVSTPPVSLCSG
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERV-AQRAGEIVSSCGVRCMRQTRTN-
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38312 for 568 contacts (-67.5/contact) +
2D Compatibility (PS) -9353 + (NN) 976 + (LL) 20
1D Compatibility (HY) -800 + (ID) 700
Total energy: -48169.0 ( -84.80 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: