Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCEEVTYYLIPCIGYGVF----GGT---------VAPSCCTGIKTLDAAAKTTEDRREKCNCVKEGAARIP-GL----NYTRVNEIPGLRGTTCPYKVTPDVDCSKVN
1S6D Chain:A ((19-97))
--------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33045 for 383 contacts (-86.3/contact) +
2D Compatibility (PS) -5718 + (NN) 3166 + (LL) 1956
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -35341.0 ( -92.27 by residue)
QMean score : 0.116
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: