Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------QCSLSQLSQCISAVT--QGTNPPPLCCNEV-ASADFGCFCNLVSRGN---YPPAYVSNAVLVPQKCGGEAYSKLKGKTCAGK------SYHTGS-------------------
1JMX Chain:A ((364-494))
KVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDANGQPLRIGYLPASWKVEPFNERAVEDEDVKFAGKMQADGVFVPGGAGPNPERKM-MTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4684 for 403 contacts (-11.6/contact) +
2D Compatibility (PS) -8803 + (NN) -2093 + (LL) 64
1D Compatibility (HY) -400 + (ID) 800
Total energy: -16716.0 ( -41.48 by residue)
QMean score : 0.231
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: