Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----AVTSCGPVVTSLYPCVSYIMN--GGNTVPA---AQCCNGIRNLNTMAQTTNDRRAVCTCIKNAVSQSGFSYTNLN----LNLAAGLPRKCGVNIPYQISPNTDCNSVH---------
1HSS Chain:A ((5-124))
MCYPGQAFQ----VPALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWC-----RCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIV--VDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60138 for 582 contacts (-103.3/contact) +
2D Compatibility (PS) -9415 + (NN) -4092 + (LL) 216
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -78979.0 ( -135.70 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: