Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVAQTLTPCLPHVSNP---GP-------S-----------PPQPCCNRVKTLNSQAKTTQDRHHVCGCLKSLMAGIP------GL----NLPAFASVAKDCGVDIGYIISPNTDCSK
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55091 for 475 contacts (-116.0/contact) +
2D Compatibility (PS) -6383 + (NN) 408 + (LL) 764
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -63402.0 ( -133.48 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: