Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVENAADCAAVGTLISSCTEFVNYG---YPDPI-----PG-------SSCCDAMTVIGTYSDSSEKRKWLCNCFMDLIN-VY----NSN-----ATAISTLSGFCGVVLG--FTIDPNTDCNFIQ
1W2Q Chain:A ((23-121))
------------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56734 for 404 contacts (-140.4/contact) +
2D Compatibility (PS) -7172 + (NN) -1168 + (LL) 1288
1D Compatibility (HY) -4000 + (ID) 400
Total energy: -68186.0 ( -168.78 by residue)
QMean score : 0.198
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: