Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNFCKIIYGNNDNQLSEKSYKSSVCNDDLFNGNEEDFVILENEKMYKTKAEFESEGYKII
2KFQ Chain:A ((2-10))
-------------------AFACPACPKRFMRSDALSKHIKTAFIVVALG-----------
General information:
TITO was launched using:
RESULT:
Template:
2KFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38 for 22 contacts (-1.7/contact) +
2D Compatibility (PS) -994 + (NN) -709 + (LL) 1156
1D Compatibility (HY) -400 + (ID) 50
Total energy: -1035.0 ( -47.05 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_2KFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KFQ-query.scw
PDB file :
Tito_Scwrl_2KFQ.pdb
: