Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVK-ESIIISLEDAISPFYSLVDKGVCYTI--PNSERITLLDICVN------QLVDNHRKIVHGVILL----LSRLRRNRKSMLFNDKYFC---
3RNV Chain:A ((336-458))
MYIAK----EGYCY---INIFLAMLVNVKESQAKEFTKVVRDKLVGELGKWPTLLDVATACYFLKVFYPDVANAELPRMLVDHKTKIIHVVDSYGSLSTGYHVLKTNTVEQLIKFTRCNLESSLKHYRVG
General information:
TITO was launched using:
RESULT:
Template:
3RNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31610 for 678 contacts (-46.6/contact) +
2D Compatibility (PS) -10921 + (NN) -263 + (LL) 176
1D Compatibility (HY) -7600 + (ID) 800
Total energy: -51018.0 ( -75.25 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_3RNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RNV-query.scw
PDB file :
Tito_Scwrl_3RNV.pdb
: