Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFLALPALFLWLLNWTLVKEIWRFNDLMQEAPEEERQLIIYRLVDTLPFITQTTYDLSAVASVNLSVNKLIEKYGENLSKDGFYTQLNR-----------ENTTNIEGYIKQSNEFKAEEKSHALKCLGFINRIEDKFQDNCSKLTLKQADILY |
1KWI Chain:A ((31-128)) | -----------------------------------------------------------ALSYREAVLRAVDRLNEQSSEANLYRLLELDGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTL--DPLDITCNEVQ-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KWI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 12570 for 445 contacts (28.2/contact) +
2D Compatibility (PS) -7450 + (NN) 556 + (LL) 7360
1D Compatibility (HY) -2000 + (ID) 600
Total energy: 10436.0 ( 23.45 by residue)
QMean score : 0.170
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