Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSGNVLLTFCSNSGYLRSDMNAVKNLVIWLLIIVITAMFIDSQKDRLRNRFLSTFLPYRGRIQDSRSVEFTKSYDGHFYIQAQVNGHNITFLLDTGATDIVLSQKDALYAGIKLQDIQDFKIYETAKGQIRA--GVVQIPQIKIGNFLINDVQASVNTHSMPHSLLGMSFLKYF--HFTIRGNKLILYCNSTY
3S8I Chain:A ((22-135))
---------------------------------------------------------------------------VTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVD--RRWAGVAKG--QRIIGRVHLAQIQIEGDFL-QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQ
General information:
TITO was launched using:
RESULT:
Template:
3S8I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82033 for 750 contacts (-109.4/contact) +
2D Compatibility (PS) -11431 + (NN) -1063 + (LL) 6000
1D Compatibility (HY) -5600 + (ID) 1400
Total energy: -95527.0 ( -127.37 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_3S8I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S8I-query.scw
PDB file :
Tito_Scwrl_3S8I.pdb
: