Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTF--------LMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILY----SMLFGVSTTLKAIPYSAIKFTSMLGIFI---------YGGTGIATVLLGQNFLSYDILLANN--VAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
2HDE Chain:A ((2-149))
GSHMRVTQEEIKKEPEKPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGR-------------
General information:
TITO was launched using:
RESULT:
Template:
2HDE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107062 for 819 contacts (-130.7/contact) +
2D Compatibility (PS) -13270 + (NN) 1835 + (LL) 1616
1D Compatibility (HY) 4400 + (ID) 1000
Total energy: -113481.0 ( -138.56 by residue)
QMean score : 0.050
(partial model without unconserved sides chains):
PDB file :
Tito_2HDE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HDE-query.scw
PDB file :
Tito_Scwrl_2HDE.pdb
: