Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGT---RSLFVNFIGKLNDKSNEITSKLVICPPFTSLPGNIEL-----NSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERT---HETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKSRLPIHGE-----YTVAYEPIWAIGTGHV----PSNNAIAEVIEVIQSYTSKK-----HVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
3UWW Chain:A ((13-258))
---IIAGNWKMNKTVQEAKDFVNALPTLPD-SKEVES--VICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK---
General information:
TITO was launched using:
RESULT:
Template:
3UWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131547 for 1795 contacts (-73.3/contact) +
2D Compatibility (PS) -24317 + (NN) -9692 + (LL) 1032
1D Compatibility (HY) -14800 + (ID) 4750
Total energy: -184074.0 ( -102.55 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3UWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWW-query.scw
PDB file :
Tito_Scwrl_3UWW.pdb
: