Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MISKEDLLELMKIRHSRRSYGQSKLAHQEEINMLIETAWLSPSRYGDEPWRQVICNRQSNQDAWEKLLSCPTEPNQKWAKDTQILIISLSTKNFHD-----HTK-----------------------------IVNFWGSHDTGIANYTFMLQSYIYEFNAHQMSRFDRNKIVKNSIYQMILI
3GBH Chain:A ((6-177))
-TRINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSD---EMKEKVKESFG-FNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDSDRY
General information:
TITO was launched using:
RESULT:
Template:
3GBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43870 for 916 contacts (-47.9/contact) +
2D Compatibility (PS) -14699 + (NN) -9025 + (LL) 324
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -70820.0 ( -77.31 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3GBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBH-query.scw
PDB file :
Tito_Scwrl_3GBH.pdb
: