Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLRKNLITSESVAAGHPDKVADQISDAVLDEYLLTDPFSRTAIETLVTKDNVIIAGEVFGPNVANSTIENVVRNTIKDIGYEHD--GFHWGEVGVNMLLHEQSNDIAIGV-------DQGAGDQGIMYGYATIETKSLMPAPIFYAHSILKNVMSVVKEAKL---GPDAKSQITLAYESN----LPVRAESIIVSIQHPED--LDQLK--VKEIIYPYVVSSLPKGWMCAEENFFVNPTGRFVIGGPVSDCGLTGRKIMVDTYGGYIPHGGGAFSGKDATKVDRSAAYMARYLAKNIVFANLAERCLVQLSYAIGVSKPTSFYIDTFGTNKVDEERIKKLIESNIDLSTRGIIKHLSLSRPIYKRTACYGHFGKESEEDDGFSWENLNLSLDLSREFSVQSNRKVSLDC |
| 4KTV Chain:B ((20-389)) | ------LFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEI--TSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVV---PAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDS-----FPWEVPKKLKY----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186179 for 3081 contacts (-60.4/contact) +
2D Compatibility (PS) -37080 + (NN) -12326 + (LL) 1328
1D Compatibility (HY) -32000 + (ID) 8750
Total energy: -275007.0 ( -89.26 by residue)
QMean score : 0.497
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