Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
1VDD Chain:A ((3-199))
YPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRV--GQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP--
General information:
TITO was launched using:
RESULT:
Template:
1VDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104217 for 1252 contacts (-83.2/contact) +
2D Compatibility (PS) -21056 + (NN) -9427 + (LL) 424
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -154526.0 ( -123.42 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1VDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDD-query.scw
PDB file :
Tito_Scwrl_1VDD.pdb
: