Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSNYFALFKIEPAFNISLDELEKKYIELSK-----------TDINERQSQNMENINKAYQVLKSPLKRAEHLLNLFGVRSQEDQH---NFEILNESMEIREYLLDCNN------LQLASGMIDEKIKDCIKNLTNNFAVKNFDEAAMQVLRLKYLYKSFEEIKNETNS--NF
1FPO Chain:A ((1-171))
--MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEEKLLDF
General information:
TITO was launched using:
RESULT:
Template:
1FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47600 for 923 contacts (-51.6/contact) +
2D Compatibility (PS) -16362 + (NN) -12017 + (LL) 180
1D Compatibility (HY) -6400 + (ID) 1850
Total energy: -84049.0 ( -91.06 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_1FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FPO-query.scw
PDB file :
Tito_Scwrl_1FPO.pdb
: