Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLLSQEANSNSVEAQKLQQVDNITPSSEGLLQQMQSLEKRIKSLEVTNRVILGLFIGTLATAMTVGAGFAIAAAPIIAGSIVGGVLATVALVALGATVYRCRAQVEAGFRYAAEKTIKGVKYIGEKIKDSAIHTKDSVKEAVSSIGQVAREETSSVLKTMGHKLSGLGASMSNLDSIPYSIGLQDSMVVSKTEEKTKNFNSIKEMFVKEVFEDKAIDSSVLVKKIFSELKGKVLEKAYSVDGQQGFKKDQLINQLGQQADFVSKLSSKKLQNLLAQGDNNLYEIFSEHHDEIKRIVKEHKTEHNFSESLNRMAKRHDENRKDSTQSSLPRSNSLSSVRTDSTVNSVAELLNSEGHRKVRSSSKLLRWLPWNKVSKAPEEAANVKYQVLPESDILAREIGKRTFYGIPVPAEGVDKTVTVNPNLFRSNSPNSLYGSPVLTPAVLLQVPKSLSLGSLSSDSGMDSGPSTLEKQSLSPEDLAKARASLKNTGSLGKLVEQQPSAS-PPAVEDVSEDLEEDFKKDKPATTFSQLKAEKSGAEVSYL |
4K5Y Chain:A ((13-423)) | ----------HYHVAAIINYLGHCISLVALLVAFVLFLRA-RSIRCLRNIIHANLIAAFILRNATWFVVQLTMSPEVHQSNVGWCRLVTAAYNYFHVTNFFWMFGEGCYLHTAIVLTNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS------------LSVAKSELDK---AIGRNSNGVIT-KDEAEKLFNQDVDAAVRGILRNAK------LKPVYDSLD---------------------------------AVRRSALINMVFQMGETGVAGFTNSLRMLQQ--------KRWDEAAVNLAKSRWYNQ------------------TPNRAKRVIATFRTG---------------TWDAYDRLRAWMFICIGWGVPFPIIVAWAIGKLYYD---------------NEKCWAGKRPGVYTDYIYQGPMALVLLINFIFLFNIVRILMTKLRAST-------TSETIQARKAVKATLVLLPLLGITYMLAFVNEVSRVVFIYFNAFLESFQGFFVSVFACFLNS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 44357 for 3058 contacts (14.5/contact) +
2D Compatibility (PS) -42587 + (NN) -9613 + (LL) 8492
1D Compatibility (HY) -16800 + (ID) 3300
Total energy: -19451.0 ( -6.36 by residue)
QMean score : 0.209
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