Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEY-NMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNADKMVHLSQ
1VD6 Chain:A ((7-223))
RPLRLGHRGAPLKAKENTLESFRLALE-AGLDGVELDVWPTRDGVFAVRHDPDTP-----LGPVFQVDYADLKAQ-----------EPDLPRLEEVLALKEAFPQAVFNVELKSFPGLG-----EEAARRLAALLR---GREGVWVSSFDPLALLALRKAAPGLPLGFLMAED-----HSALLPCLGVEAVHPHHALVTEEAVAGWRKRGLFVVAWTVNEEGEARRLLALGLDGLIGDRPEVLLPLG-
General information:
TITO was launched using:
RESULT:
Template:
1VD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90189 for 1854 contacts (-48.6/contact) +
2D Compatibility (PS) -23473 + (NN) -8837 + (LL) 1584
1D Compatibility (HY) -13200 + (ID) 2950
Total energy: -137065.0 ( -73.93 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1VD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VD6-query.scw
PDB file :
Tito_Scwrl_1VD6.pdb
: