Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDE-KVSSILSIIKK-HIDIQEKLDTYNGLLGVSVSIHGVVDNEQHVT-YLP-FHETEGISIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVSDNV-E-IFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYS-RNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA |
2AA4 Chain:A ((1-289)) | ------------------------------------------------------------------------MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPL------QAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIAINDAQAAAWAEFQALD-GDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELA-GADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLA-EGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGE------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AA4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185522 for 2468 contacts (-75.2/contact) +
2D Compatibility (PS) -30384 + (NN) -13320 + (LL) 6256
1D Compatibility (HY) -3200 + (ID) 2000
Total energy: -228170.0 ( -92.45 by residue)
QMean score : 0.494
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